PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g058030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 364aa    MW: 41347.4 Da    PI: 6.2844
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g058030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.6e-105299154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+ ++ a  kl+
  Csa03g058030.1 52 TKYKGVVQQQ-NGNWGAQIYAD-----HRRIWLGTFKSAAEAAASYDSASIKLR 99
                    69****9888.8******9993.....4*********************99997 PP

2B387.51.1e-27188283184
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f k+ltpsdv+k++rlv+pkk a +h            +g++ + +++ ++d+  r+W+++++y+k+s+++v+t+GW+ Fvk+++Lke+D++vF+
  Csa03g058030.1 188 FRKELTPSDVGKLNRLVIPKKNAVKHlpyisddhnekeEGETVGAVEIDFYDRAMRQWNFRYCYWKSSQSFVFTRGWNAFVKEKNLKEKDIIVFY 282
                     89******************************9988887777799*************************************************9 PP

                     E CS
              B3  84 l 84 
                      
  Csa03g058030.1 283 N 283
                     3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.28E-2252112No hitNo description
Gene3DG3DSA:3.30.730.103.4E-1553110IPR001471AP2/ERF domain
PROSITE profilePS5103216.9553110IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1353112IPR016177DNA-binding domain
SMARTSM003802.8E-1453116IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.2E-31184284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-25186284IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-25187282No hitNo description
PfamPF023621.4E-24188284IPR003340B3 DNA binding domain
SMARTSM010194.1E-17188299IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744188297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDMDEMSNED KTTTETSGSS DSVLPLMKRV KPTVVVETTT KPPALSNTVT TTKYKGVVQQ  60
QNGNWGAQIY ADHRRIWLGT FKSAAEAAAS YDSASIKLRS FDANSHRNFP WSDFTTHEPD  120
FQKPFTTEAV LNMIKEGSYQ HKFRDFLKLR SQMVARINIG GSKQVQGGGG RGEAEQESDK  180
CFSYTELFRK ELTPSDVGKL NRLVIPKKNA VKHLPYISDD HNEKEEGETV GAVEIDFYDR  240
AMRQWNFRYC YWKSSQSFVF TRGWNAFVKE KNLKEKDIIV FYNCDVPSNA MTLEGQSKNF  300
KMIDVQYFSG NGFMVPEEVN KTAEESSDEE MKTGNVFSSK LEDEEPKPEE KKGGFMLFGV  360
RIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2518728113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g058030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500682.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLR0IGJ80.0R0IGJ8_9BRAS; Uncharacterized protein
STRINGXP_010500682.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-172RAV family protein