PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g056670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 345aa    MW: 39900.2 Da    PI: 8.7295
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g056670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-114086254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +ykGV + + +g W A+I+       +kr++lg+f +a eAa a++ a  kl+
  Csa03g056670.1 40 KYKGVVQQP-NGNWGAQIYAD-----HKRIWLGTFKSAAEAATAYDSASIKLR 86
                    8********.8******9993.....4*********************99997 PP

2B387.31.3e-27171274188
                     EEEE-..-HHHHTT-EE--HHH.HTT.................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                     f+k+ltpsdv+k++rlv+pkk+a ++                 g      e+++l+++d++ r+W++k++y+k+s+++v+tkGW++Fvk+ +Lke
  Csa03g056670.1 171 FQKELTPSDVGKLNRLVIPKKHAVKYlpyinddpnekleegeiG---GavEDVELVFYDRTMRQWKFKYCYWKSSQSFVFTKGWNSFVKERKLKE 262
                     99****************************99888766666652...044999****************************************** PP

                     T-EEEEEE-SSS CS
              B3  77 gDfvvFkldgrs 88 
                     +D++ F+  + s
  Csa03g056670.1 263 KDVISFYICDVS 274
                     ******954434 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-174098IPR001471AP2/ERF domain
SMARTSM003803.7E-1740103IPR001471AP2/ERF domain
CDDcd000188.16E-224097No hitNo description
PROSITE profilePS5103217.5564097IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-144098IPR016177DNA-binding domain
PRINTSPR003674.5E-54152IPR001471AP2/ERF domain
PRINTSPR003674.5E-56177IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-30166270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-27170274IPR015300DNA-binding pseudobarrel domain
CDDcd100178.94E-24171269No hitNo description
PROSITE profilePS5086311.448171286IPR003340B3 DNA binding domain
PfamPF023621.2E-24171275IPR003340B3 DNA binding domain
SMARTSM010193.3E-19171283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTETETFLPP KKRMRLSDEP EKPLVVASAT KTVTVLGNVK YKGVVQQPNG NWGAQIYADH  60
KRIWLGTFKS AAEAATAYDS ASIKLRRFDA NSHRNFPRSD VTAYEQEFQD TYELEAVLNM  120
IKDGSYQNKF RDFLKLRSQM VERINDGGSK QVRGEADQES DKCFYRTQQQ FQKELTPSDV  180
GKLNRLVIPK KHAVKYLPYI NDDPNEKLEE GEIGGAVEDV ELVFYDRTMR QWKFKYCYWK  240
SSQSFVFTKG WNSFVKERKL KEKDVISFYI CDVSDNVKTL EGQSQDKNFR MIDVRYYSEN  300
GSVVPKEVNM KTENFVSSKL KDEETKTEEK KGSFMLFGVM IQCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-25168271596B3 domain-containing transcription factor NGA1
5os9_B4e-25168271596B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g056670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501941.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-178RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLR0GSI30.0R0GSI3_9BRAS; Uncharacterized protein
STRINGXP_010501941.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-163RAV family protein