PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g055860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 464aa    MW: 51355.3 Da    PI: 6.8819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g055860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075197219123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk F++   L  H  +H
  Csa03g055860.1 197 FECTVCGKGFTTYQALGGHKASH 219
                     89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.63E-8196219No hitNo description
SMARTSM003550.031197219IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-12197220IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.739197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-8246273No hitNo description
SMARTSM003550.1251273IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-12251275IPR007087Zinc finger, C2H2
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDLKTTLDQC PPLRKLTSLK HRFLQPLNQD DLTSYERPKR KFSSLRGNDD GQEDPSWKRI  60
RFKLRPEKKD DAVFVESPRF KSSQLTIRQR STSDDSSDTM KHGIEVGEGF TSDAVFYKPW  120
FDSLRLKRQR LGEDQDPSSC SPSVDDIAAL TLIQFSRDDR QSKTQTLIPQ PQTQPQTQTQ  180
TQTHTTQQQT PVKSDLFECT VCGKGFTTYQ ALGGHKASHR VKPPQPLVEN AGVDAGDKTR  240
TKMLAPSGKI HKCSICHVVF PTGQALGGHK RRHYEGVLGG HKQGSDEVVH KLSPDSNGSS  300
LVTKVLDPEQ SFSVSENVLL SGHKRNQDEV VHKLSLDSNG ILVTKVLDPE LSLSVSENVL  360
LSGHKRSQDE IVPSVDKWSL SDASVVKNLV NLELSLGGQK RSQDEEVVLG ENKWSASCNG  420
SGVTNVSEPE QSQRRLIDLN SPPSPEFDES GVRDVEEAES AIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501921.10.0PREDICTED: uncharacterized protein LOC104779257
TrEMBLR0I2R11e-140R0I2R1_9BRAS; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10031831e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-27zinc-finger protein 2