PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g033390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 305aa    MW: 34021.1 Da    PI: 9.0618
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g033390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.7e-35191352134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                      g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++          +++++        ++  +
  Csa03g033390.1  19 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD--L-----ENQNQ--------TK--S 96 
                     689************************************************************944444..2.....22222........22..3 PP

             TCP  97 skksqksaasalnlak.esrakarararertrekmrikn 134
                       +s +s++s l+l++ e r kar+rarert+++  ++ 
  Csa03g033390.1  97 ACSSGTSESSLLSLSRtEIRGKARERARERTAKERDKDL 135
                     34455666667999999**************99987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-2920142IPR005333Transcription factor, TCP
PROSITE profilePS5136930.7882179IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.461113131IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMKDWNNPSS RIIRVSRASG GKDRHSKVLT SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ  60
PSKAVEWLIN AASDSITDLP PINTNFDLEN QNQTKSACSS GTSESSLLSL SRTEIRGKAR  120
ERARERTAKE RDKDLQNAHQ SSFTQLLTGG FDQQQQQQQP DNHRNWTGGS DCFNPVQFIP  180
NSSSTSHQEP TMNQNNHPFS FVPDQYNFGI SSSSALNGGY SSRGTLQSNS QSLFLNNNIT  240
QRASISSSSS SSSPMDSQSI SFFMATPPPL DHHSHQLPST FDGRLYLYYG EGNRNSDDKD  300
KDRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-212680155Putative transcription factor PCF6
5zkt_B8e-212680155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g033390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735061e-144AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence.
GenBankAY0350081e-144AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankAY0576721e-144AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds.
GenBankAY1138981e-144AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankCP0026841e-144CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460809.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_010460810.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_010460811.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_019091815.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_019091816.10.0PREDICTED: transcription factor TCP24 isoform X1
SwissprotQ9C7581e-160TCP24_ARATH; Transcription factor TCP24
TrEMBLR0I1L01e-167R0I1L0_9BRAS; Uncharacterized protein
STRINGXP_010460808.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-112TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]