PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g026440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21558.2 Da    PI: 9.7993
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g026440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-143574342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i ++  r vtf kR+ g+lKK +EL +LC+  ++ ii+s+
  Csa03g026440.1 35 IADHATRRVTFRKRKDGLLKKINELTILCGLPACAIIYSE 74
                    778899*********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.85E-2124108IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-162584IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.3392574IPR002100Transcription factor, MADS-box
CDDcd002662.01E-2126109No hitNo description
PRINTSPR004042.0E-72747IPR002100Transcription factor, MADS-box
PfamPF003194.2E-143574IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-74762IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MFKEKIYQIG QNSLQMYQDS FGGTMGRRKV THQLIADHAT RRVTFRKRKD GLLKKINELT  60
ILCGLPACAI IYSEYKDGPE LWPNVNEVRS LLDRLSELPV EKQTKYMMDQ KDLMKKMIQD  120
AEKKLEKEKW YTRAMKLGIM ASTSDLTTDT DCSEELAKAA EVVDKKLKAI RERIKAVEAG  180
APIIKRE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12648RRKVTHQLIADHATRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g026440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065511e-169AC006551.6 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence.
GenBankAY1412501e-169AY141250.1 Arabidopsis thaliana MADS-box protein AGL87 mRNA, complete cds.
GenBankCP0026841e-169CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498732.11e-116PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
TrEMBLR0GZP31e-106R0GZP3_9BRAS; Uncharacterized protein
STRINGXP_010498732.11e-115(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-98AGAMOUS-like 87