PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g009730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 230aa    MW: 26216.1 Da    PI: 9.857
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g009730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.42.2e-3342132191
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                     aCa+Ck++r+kC+++C+l+py+pa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r+rdPv G++g ++++ ++l+  k
  Csa03g009730.1  42 ACASCKHQRKKCNNECILSPYYPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQRDPVLGSYGEYRRVCEELKLYK 132
                     7*********************************************************************************999998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.72641141IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3042132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKVNKRAKSF LYEGHDMMQR NSNTTTTNNN NNISNNSSSH QACASCKHQR KKCNNECILS  60
PYYPARKTKE FQAVHKVFGV SNVQKMVRTV REEDRTKLSD SLTWEALWRQ RDPVLGSYGE  120
YRRVCEELKL YKSLFHNQPL LGWDNNHQRV YTNNNNNKTT GLVMNSSGSG GFSTVNNNGV  180
GVNGEIVNGG SYTSRDLQDG WENLKHDQRQ QCYAAVINGF KQGQHYLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-16431191288LOB family transfactor Ramosa2.1
5ly0_B1e-16431191288LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g009730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF9P140.0AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097674.11e-160PREDICTED: LOB domain-containing protein 2-like
SwissprotQ9LNB91e-111LBD2_ARATH; LOB domain-containing protein 2
TrEMBLV4MVQ11e-110V4MVQ1_EUTSA; Uncharacterized protein
STRINGXP_010485944.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105392635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-94LOB domain-containing protein 2