PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g035390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 99aa    MW: 10618 Da    PI: 10.1824
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g035390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.7e-203367135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+nCgt+kTplWR gp+g+k+LCnaCG++ +kk++
  Csa02g035390.1 33 CANCGTSKTPLWRGGPSGPKSLCNACGIRSKKKRR 67
                    ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.61E-142669No hitNo description
PROSITE profilePS5011413.4022763IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-142779IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.5E-173167IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.25E-133267No hitNo description
PfamPF003204.1E-183367IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MLDHSEEVLV DSETMERRAG DVMIEQSNNK KTCANCGTSK TPLWRGGPSG PKSLCNACGI  60
RSKKKRRVTE DDGNKKLKKS SYGGGGTPKF GDSLKNRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KKKRR
26267KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g035390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442389.16e-52PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ103e-38GAT16_ARATH; GATA transcription factor 16
TrEMBLR0EY232e-39R0EY23_9BRAS; Uncharacterized protein
STRINGXP_010442389.12e-51(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-33GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]