PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g033460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 296aa    MW: 33815 Da    PI: 6.1218
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g033460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.23.7e-071242144
                    HHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF 21 lKKAeELSvLCdaevaviifsstg 44
                    +KK +ELS+LC++  + iifs+ +
  Csa02g033460.1  1 MKKVNELSTLCGITSCAIIFSPYD 24
                    8********************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.42E-12167IPR002100Transcription factor, MADS-box
CDDcd002663.09E-16157No hitNo description
PfamPF003191.3E-5123IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKKVNELSTL CGITSCAIIF SPYDTTPEVW PSNSGVQKII SEFRTLPEMD KQKKMVDQEA  60
FLKQRIAKAI ENLRRQRKDN RELEMTEVMF QCLIGNIGMF HLNIMDLNDL GYLIEQYLKD  120
VNRRVEILQN LGIEIGKSSS TVAATSEGSR LMVDLVATTT PTATTYEVGS SSSYAAVTTL  180
LNPIQQQQIF RPTAPQIGVY QPRQNLNLNL NNNNNQNQQQ WFMEMTNHEQ MRYPSEPMKF  240
SFMDDNHHNH NHIHHHQEEN QHQIDGESST ALDAANSNST IPVTYPNNTN NLWFH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g033460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471368.10.0PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-125AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A178UE431e-123A0A178UE43_ARATH; FEM111
STRINGXP_010471368.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-121AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]