PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g005130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 296aa    MW: 33686.6 Da    PI: 5.4829
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g005130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.85.6e-081222142
                    HHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF 21 lKKAeELSvLCdaevaviifss 42
                    +KK +ELS+LC+++++ ii+s+
  Csa02g005130.1  1 MKKVNELSTLCGINACAIIYSP 22
                    8********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003193.4E-6123IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-12167IPR002100Transcription factor, MADS-box
CDDcd002669.87E-19157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKKVNELSTL CGINACAIIY SPYDSNPEVW PSNSGVQRIV SEFRALPEMD QQKKMVDQVT  60
FLRQRIAKVS DHFRRERKDN RELEMIEVMF QCLLGNMGKF HMNIMDLNDL GYLIDQYMKD  120
INHRFEILQN SGMEIGESSN AGAAVGTTFE WTGSMEVMAS TTPPTTTINE AGSSSLAAFL  180
NPLQQQQHHQ QFRYPSSPHV GLYEQPPSLN LNLNQNYSQN QHQWFMDMTH HQPEPLNYAD  240
ADQQRGFLFM DDNHQPQHQH DQQILGDSST VSTVATTSST IPVTNPSPTN NTWFR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g005130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466902.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-103AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0G6N61e-127R0G6N6_9BRAS; Uncharacterized protein
STRINGXP_010466902.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-97AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]