PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g044210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 454aa    MW: 49267.4 Da    PI: 6.8217
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g044210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.61.3e-3596186398
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     f r+wse+Dei+lLqG+i fka++g+sp+dd+++f+   k+sisf+++k+q+veKir+LK+K+ +k k+     + sf k+hd k+f+l++ iWg
  Csa01g044210.1  96 FARIWSEDDEISLLQGMIRFKAEKGTSPYDDMNGFFLVTKDSISFDATKTQFVEKIRSLKNKYYNKGKD-----SRSFLKPHDVKCFKLASCIWG 185
                     89**************************************************************99888.....89******************9 PP

          DUF573  98 s 98 
                     s
  Csa01g044210.1 186 S 186
                     5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-2896185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAKKVLNPLE DPPTASSSSD EEEVESSSSG EEGEEQQQQQ LSISDEPKNP SPKPLKTPST  60
AAAAAPSSGS EKKRASEEAN EEHAKRAKTL SQKSPFARIW SEDDEISLLQ GMIRFKAEKG  120
TSPYDDMNGF FLVTKDSISF DATKTQFVEK IRSLKNKYYN KGKDSRSFLK PHDVKCFKLA  180
SCIWGSDDAV ALLDSAPPVI VKSPPVAVKS PPVDVISNKV DKKKKKKLEF GDEEMQVLGS  240
DDGMALLDSA PPVAVTLAVK PPPVAVISNK VVDKKKKKKL EVEDKEKKVL GSDDGMALLD  300
SAPAVKSPPV AVISNQVDKK NKNKKKKKLE VEDEKVQVLG SDGMVLESAA VVKANGSLKP  360
EGDTVEKDKE VVILLGGVSE SSDLFDKSFL VPLIVSLGGV DECSVKHKWS KVPMETKKRI  420
EDKLKLVEAK EFELLLQKSD IVKEVASVIT QAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272279DKKKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416136.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLR0G5T36e-59R0G5T3_9BRAS; Uncharacterized protein
STRINGBra032717.1-P3e-41(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.15e-30DNA-binding storekeeper protein-related transcriptional regulator