PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g030370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 296aa    MW: 34478.5 Da    PI: 8.6967
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g030370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    ien+  r +   kRr+g+lKK  E+ +LCd++++vi+fs++
  Csa01g030370.1 11 IENDNSRVIRSKKRREGLLKKIDEVTILCDVKACVIMFSPE 51
                    99999999999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-19180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.451149IPR002100Transcription factor, MADS-box
CDDcd002661.69E-24285No hitNo description
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MARKKIKLAW IENDNSRVIR SKKRREGLLK KIDEVTILCD VKACVIMFSP EEDYPMVWPS  60
LKQARDLLDD FFALPEIEKK RKETSLESYL KEKTKKVHEQ LMKTHKKNQN YAIDQLMLQL  120
HRGRSIADLN LNEIYALIYF SKDNVILHRK RLHFVQHSPL RDPPVPLFHR KFEEFETTTN  180
DVFARGHQED ERAWNTNEAM KEININAAIP GNQSCYLIDQ WFPLQGNNIN GKTNLEMEPI  240
VAPVISFHGL VGSVSQPLQH HNTNNNPSMA MSQPNQCPYD FMNPEFGGQR ERKHC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIKLAWIENDNSRVIRSKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g030370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096769.10.0PREDICTED: floral homeotic protein PMADS 1-like
TrEMBLV4NQI01e-113V4NQI0_EUTSA; Uncharacterized protein
STRINGBostr.19424s0082.1.p1e-137(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.14e-99AGAMOUS-like 48