PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g019700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 352aa    MW: 41146.2 Da    PI: 10.6255
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g019700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.1e-1819112198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++ ++d +++++  +p +f+++++ kk  s +++++ ++g+sW+v++  +k+ + y+++ +GW +Fv++n L  ++f++F ++g++ f  +v
  Csa01g019700.1  19 FFKIFQSADLSSEHMRAFPYNFMSKIS-KKDFSYKMVIRAQWGKSWNVEV--SKNTRYYYIEkRGWDQFVSDNSLGRNEFITFIHKGKMIF--NV 108
                     99*********************9996.457999****************..888888555549********************9998988..77 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++++
  Csa01g019700.1 109 HIYE 112
                     7765 PP

2B339.31.2e-122613371395
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ++ l +pk+f+++h    ++sk+ t+++++g+sW+v +    +  r+++++G ++ +++  + +gD ++Fkl++  +fe+v+ 
  Csa01g019700.1 261 LKFLAIPKQFVDDHLP--QKSKMFTIRHPNGKSWKVLC--LVREIRTIFSGGYSKLAREFPISVGDKCTFKLID--TFEFVLD 337
                     45689********963..47889***************..8888899************************997..5555665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1814115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-1914119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-1519111No hitNo description
SMARTSM010191.6E-1919114IPR003340B3 DNA binding domain
PfamPF023625.9E-1719112IPR003340B3 DNA binding domain
PROSITE profilePS5086313.16919114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-18248338IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.856249342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16250338IPR015300DNA-binding pseudobarrel domain
CDDcd100179.20E-13250338No hitNo description
SMARTSM010192.5E-14252342IPR003340B3 DNA binding domain
PfamPF023622.2E-11259337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGWNTGFDRI KEERKNLGFF KIFQSADLSS EHMRAFPYNF MSKISKKDFS YKMVIRAQWG  60
KSWNVEVSKN TRYYYIEKRG WDQFVSDNSL GRNEFITFIH KGKMIFNVHI YEQNCMEILI  120
PRNLLSMGSS KKFKKKKKKK TKSFALMMKT GGIKREEGDC SYKDVKKEDE EIDESPGRVE  180
IKIRKKKTEE TKTSKKKMLN KKVKNGMERG ESSRGVELKG MKKKAEASIS SKKNRKSKSK  240
INKKVIDGVP EFEITIKKSY LKFLAIPKQF VDDHLPQKSK MFTIRHPNGK SWKVLCLVRE  300
IRTIFSGGYS KLAREFPISV GDKCTFKLID TFEFVLDIPK KTREEIPFMI D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138KKFKKKKKK
2133139KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936185e-82AB493618.1 Arabidopsis thaliana At3g17010 mRNA for hypothetical protein, partial cds, clone: RAAt3g17010.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504892.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-139Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLR0I7T01e-172R0I7T0_9BRAS; Uncharacterized protein
STRINGAT3G17010.11e-136(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-119B3 family protein