PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g016500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 253aa    MW: 28616.2 Da    PI: 10.2499
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g016500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.53.9e-32137193158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh+hAl+R+RgsgGrF
  Csa01g016500.1 137 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IKVRKPYLHESRHRHALKRARGSGGRF 193
                     59****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.8E-36135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.5136196IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.3E-27138193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-23139161IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-23170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEMMSTHFPR MKQTDFQLQD HDSSSTQSTG GESYSEVASL SEPNTRYGHN IVTHLSGYKE  60
NPENPIRSHC KSILSKVSQH SVVPPIEAAS WPLHSTETPH FNGYLSFPYA SQHTVQHPQI  120
GGLVPSRMLL PHNIPENEPI FVNAKQYQAI LRRRQHRAKL EAQNKLIKVR KPYLHESRHR  180
HALKRARGSG GRFLNTKKLQ ESKPPPFSGS PHVCKNSPGK FWQQDITGNN NDMFQQNGFS  240
GYPSNHHVSV LM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20137197262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177186RHRHALKRAR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g016500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936131e-179AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101730.10.0PREDICTED: nuclear transcription factor Y subunit A-6-like
SwissprotQ9LVJ71e-135NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLR0HNB91e-151R0HNB9_9BRAS; Uncharacterized protein
STRINGXP_010487188.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147331620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-138nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]