PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g012910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 338aa    MW: 38662.1 Da    PI: 7.1877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g012910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.41.2e-101050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    rien+  r++t+ k  +++ KK +EL +L d+++++ii  +
  Csa01g012910.1 10 RIENNQSREITLKKKITTLQKKVKELTILSDVRACLIISNP 50
                    9************************************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.521147IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-17392IPR002100Transcription factor, MADS-box
CDDcd002662.79E-22381No hitNo description
PRINTSPR004043.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-91054IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPRKKVKLAR IENNQSREIT LKKKITTLQK KVKELTILSD VRACLIISNP NEGEPVVWPS  60
LETTHGLLDR FFALPKFLRD KYAMTVESYI EEETSKIQAK LTRVHNEKRR YETDEMMNQL  120
QERHINIADL NLSERYALLS FSREKILSYR RHLNEQFPPL PDLATGNNQD EATRRISINA  180
LMENESHYLI DQWVSPLNPP ILGMDPNPRS YCPYQGSSSK GNHHLEMDPV CPQMVTSYGL  240
LGSVSPPSQH HNMNVNPMMV MNPPRQYPFD IMSCDVGVNE EGNNISNSQF YMSNNIIIPT  300
NAGLHQEPQM MAFDGLHGSV SQPSQHHNPM MVMNPPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g012910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464888.10.0PREDICTED: uncharacterized protein LOC104745375
TrEMBLA0A178VQF22e-89A0A178VQF2_ARATH; AGL48
TrEMBLQ9XEF12e-89Q9XEF1_ARATH; AGAMOUS-like 48
STRINGXP_010464888.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.12e-81AGAMOUS-like 48