PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g012670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 328aa    MW: 36770.6 Da    PI: 7.645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g012670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3191201199
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae++               +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F+
  Csa01g012670.1  91 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnnggggddVATSEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQ 185
                     99***************************9999988774445699************************************************** PP

                     E-SS.SEE..EEEEE-S CS
              B3  84 ldgr.sefelvvkvfrk 99 
                     ++ r +  +l+++++r+
  Csa01g012670.1 186 RH-RfDLHRLFIGWRRR 201
                     65.44788889999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-122465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-83269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-4081209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3088202IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-2890192No hitNo description
PfamPF023627.0E-2991201IPR003340B3 DNA binding domain
PROSITE profilePS5086313.26791202IPR003340B3 DNA binding domain
SMARTSM010192.8E-2491202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSVNHTYHNT LSLQQQQHMH HQNDVAVAQR ESLFEKSLTP SDVGKLNRLV IPKQHAEKYF  60
PLNNNGGGGD DQQQHMHHQN DVAVAQRESL FEKSLTPSDV GKLNRLVIPK QHAEKYFPLN  120
NNGGGGDDVA TSEKGMLLSF EDESGKCWKF RYSYWNSSQS YVLTKGWSRY VKDKHLDAGD  180
VVFFQRHRFD LHRLFIGWRR RGEASSSPAV SVVSQEALVN TTAYWSGLTT PYRQVHASTT  240
YPNIHHEYSH YGAVADHQAR STSTAVAGSS RTVRLFGVNL ECHGDAVEPP ARTDGYNGQH  300
IYYYSTPHPM NLSFAGEALE QVGDGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-458820111117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1752810.0AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13.
GenBankAJ4410760.0AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497164.11e-178PREDICTED: B3 domain-containing protein At3g11580 isoform X1
SwissprotQ8RYD31e-164Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLD7LAP41e-167D7LAP4_ARALL; Putative uncharacterized protein
STRINGscaffold_301330.11e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-159B3 family protein