PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g005410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 335aa    MW: 36889 Da    PI: 9.5911
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g005410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31267324359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Csa01g005410.1 267 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 324
                     9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-15226263IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.2E-33253324IPR003657WRKY domain
PROSITE profilePS5081129.356260326IPR003657WRKY domain
SuperFamilySSF1182901.57E-26263324IPR003657WRKY domain
SMARTSM007744.6E-37265325IPR003657WRKY domain
PfamPF031061.4E-26267323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEVEAANKS AIESCHGVLN LLSQQAGSDP KSLVAETGEA VSKFKRVASL LSRGLGHGKF  60
RSINKFRSSF PQHIFLESPI CCAANDVTGD YTQVLAPEPL QMVPASAVYD GIDPKHHMGH  120
PLPLIHNMCV DKSFLELKQP PPFRAPYQLI HNHQQIAYSR SNCGVNLKFD GSGSSCYTPS  180
VSNGSRSFVS SLSMDASVAD YDRKSFHLTG LSRGSDHISQ HSRKMCSGSM KCGSRSKCHC  240
SKKRKMRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  300
KHVERCIDET SMLIVTYEGE HNHSRILSSQ SAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20258323771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g005410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4048600.0AF404860.1 Arabidopsis thaliana WRKY transcription factor 39 (WRKY39) mRNA, complete cds.
GenBankAY0534200.0AY053420.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
GenBankAY1335860.0AY133586.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417626.10.0PREDICTED: probable WRKY transcription factor 39
SwissprotQ9SR070.0WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLD7L2W90.0D7L2W9_ARALL; WRKY DNA-binding protein 39
STRINGXP_010417626.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.10.0WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]