PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g001660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 363aa    MW: 40239.3 Da    PI: 7.1575
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g001660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.11.2e-3272186289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++  ++++s  + ++   +      
  Csa01g001660.1  72 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSlfNHHQSFLNLGQRPVHqdptql 166
                     689*************************************************************9999988876666666665544443555566 PP

             TCP  89 ...................k 89 
                                        +
  Csa01g001660.1 167 gfkingcveetttssrevnN 186
                     66666665433322222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-2974175IPR005333Transcription factor, TCP
PROSITE profilePS5136931.31474132IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNIVPWKDAN DEVSGGAATR REGDIEEDQE EDQARATSGK TVNKKPSTSI SSSSSSWMKS  60
KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI QLYDLQERLG VDQPSKAVDW  120
LLDAAKEEID ELPPLPISPE NFSLFNHHQS FLNLGQRPVH QDPTQLGFKI NGCVEETTTS  180
SREVNNKEKG DNDVVFTNNH HIGSYGTYHH NMEHHHHHHQ HQHLSFQGDY HQHQLHSLVP  240
FPSQILVCPM TTSTTTTTIQ SLFPSSSSAG SGTMESIDPR QMASHFQMPL MGNSSSSSSS  300
QNISTLYSLL HGSSSNNNGG RDINNRMPYV QFSRDNTTTA ASMSKLRGSE SSSTSRGSEH  360
HM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1979133155Putative transcription factor PCF6
5zkt_B2e-1979133155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g001660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0144650.0AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds.
GenBankATAC0097550.0AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence.
GenBankATAC0116640.0AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence.
GenBankBT0019820.0BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds.
GenBankBT0088390.0BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450307.10.0PREDICTED: transcription factor TCP13-like
SwissprotQ9S7W50.0TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A178VKM00.0A0A178VKM0_ARATH; TFPD
STRINGXP_010450307.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-161plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]