PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01363s010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 143aa    MW: 16103 Da    PI: 6.217
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01363s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.5e-122341547
                    HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47
                    kR++gi+KK +EL +LC+++++ +i+s+ + + 
  Csa01363s010.1  2 KRKKGIMKKLHELTTLCGVQACGVIYSPYQAVP 34
                    9**************************988775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.993128IPR002100Transcription factor, MADS-box
CDDcd002661.40E-16243No hitNo description
SMARTSM004326.3E-4239IPR002100Transcription factor, MADS-box
PfamPF003192.8E-10231IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-13254IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKRKKGIMKK LHELTTLCGV QACGVIYSPY QAVPEVWPSK EEEVYNSMTW IHDLNSDLNH  60
NMTLNLDLNS NQYLNQENSF NDMMLAQNVG YAGGHAIIPF IDHYNYHQQP TGYLAITNNM  120
PSITSSTTST TSVYGSYINN NF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01363s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424357.15e-59PREDICTED: agamous-like MADS-box protein AGL36
TrEMBLR0FKQ98e-31R0FKQ9_9BRAS; Uncharacterized protein
STRINGXP_010424357.12e-58(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.12e-18AGAMOUS-like 90