PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00382s260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 199aa    MW: 22340.8 Da    PI: 5.741
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00382s260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.11.1e-2814144589
             TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssasece 74 
                     +++ +++h kvggRdRR+Rl+ ++a ++F L+deLGf +d++t+ WLl++a+pai ++tg                          +        
  Csa00382s260.1  14 TRTPKDRHLKVGGRDRRIRLPPSVAPQLFNLTDELGFQTDGETVGWLLRNAEPAIFAATGHgvsttpndvihssnnnfhnyysncnN-------- 100
                     56789********************************************************77444444444333333333333330........ PP

             TCP  75 aesssssasnsssg..........................................k 89 
                                                                              
  Csa00382s260.1 101 -------------YtihgncsytidgdnwtgvntvhhemvfpvsimkehaasscfpV 144
                     .............03444444444444455555554444444433333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136924.3381771IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-2517146IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDSGKEMNNM EKATRTPKDR HLKVGGRDRR IRLPPSVAPQ LFNLTDELGF QTDGETVGWL  60
LRNAEPAIFA ATGHGVSTTP NDVIHSSNNN FHNYYSNCNN YTIHGNCSYT IDGDNWTGVN  120
TVHHEMVFPV SIMKEHAASS CFPVKDKEDV SDMSSQTQPA MLPPLIHHQQ QQEQEPQPQF  180
ELGKVEMAAD EKRYVWSE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495849.11e-151PREDICTED: transcription factor TCP16-like
SwissprotQ9M1U43e-53TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL81e-67D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.14e-67(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.13e-53TCP domain protein 16