PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00382s220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 187aa    MW: 20463.6 Da    PI: 6.2204
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00382s220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP82.31.2e-25161321089
             TCP  10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.....eaesssssasnsssg...... 88 
                     k  T+   R RR+Rl++ ca ++F+L++eLGf++d++t+ WLl+ a+p i ++tg      s    s+c     + ++ss++++  s g      
  Csa00382s220.1  16 KTPTSSRDRNRRIRLPVGCASQVFQLTQELGFKTDGETVGWLLRIAEPDILAATGHgvnttS----SDCihpciNIHNSSNMNQ-LSFGnnctid 105
                     66789999************************************************865441....233333342222222222.1111223343 PP

             TCP  89 ..........................k 89 
                                                
  Csa00382s220.1 106 nsvhyadtsavvsqahqrenitghhgL 132
                     333332222222222222224444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.1861268IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2118122IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVLRNNKNNI GGKARKTPTS SRDRNRRIRL PVGCASQVFQ LTQELGFKTD GETVGWLLRI  60
AEPDILAATG HGVNTTSSDC IHPCINIHNS SNMNQLSFGN NCTIDNSVHY ADTSAVVSQA  120
HQRENITGHH GLVSPAATMS TDYGHSTSFP ENSMPHQQPQ PQPLDDEFDE EEMGMAAQTY  180
AIPREY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00382s220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495846.11e-140PREDICTED: transcription factor TCP16-like
TrEMBLD7LNL11e-61D7LNL1_ARALL; Uncharacterized protein
STRINGXP_010495846.11e-139(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.18e-29TCP domain protein 16