PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575333.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 393aa    MW: 44919.7 Da    PI: 7.4793
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.13.5e-431122462133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 
                     ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+ai elt ++++sa+    +a++++++++ s s++++++ 
  XP_012575333.1 112 PAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTISKNPSANVDdyDANDDVNNDDDSFSSSSCEDM 206
                     68**************************************************************9999966577888888888877788899999 PP

             TCP  95 a.kskksqksaasalnlakesrakarararertrekmrik 133
                       +++++ k+  +  +++k+ r kararare    + + +
  XP_012575333.1 207 IdNKERKMKRVVKETSKMKDLRGKARARAREXXXXRRCED 246
                     8899999999999999999************888877766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-36113241IPR005333Transcription factor, TCP
PROSITE profilePS5136935.735114172IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.81225250IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MFPSTYCSLG PYPCYTSSSS SHSYPPFTFL TPENASSNTN NNNNNNMNTF LHDPVITIPY  60
TQTTHHHVPI PESLTNWAVS DYATMLKQDL SHHHGSSYGF TNLLTKKQVK KPAKKDRHSK  120
IHTSQGLRDR RVRLSIEIAR KFFDLQDMLG FDKASNTLEW LFNKSKEAIE ELTISKNPSA  180
NVDDYDANDD VNNDDDSFSS SSCEDMIDNK ERKMKRVVKE TSKMKDLRGK ARARAREXXX  240
XRRCEDLKEK YVESENPQQI LHQLMPNDDE NNISKSQQPR LVHHLGVGGG EFQRDDIFNF  300
IEESIVIKRK LKKSSVSSSS NSHHQQNNLI SKEPLGFDNH NNDCHESTMS PNWDANNAGR  360
SNFSSISRMN LSSGLQIFGK SWEECNSSPN NRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5749156e-42EU574915.1 Pisum sativum cultivar JI992 keeled wing mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575333.20.0LOW QUALITY PROTEIN: transcription factor DICHOTOMA
TrEMBLA0A1S3EIU60.0A0A1S3EIU6_CICAR; LOW QUALITY PROTEIN: transcription factor DICHOTOMA
STRINGXP_007151756.17e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-30TCP family protein