PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573661.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 352aa    MW: 39831.5 Da    PI: 4.5341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.3e-10175219554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++Er RR+++  +f  L  l+P +     kK++Ka++L  A++Y+k+L
  XP_012573661.1 175 HIMAERLRREKLSVSFIALGALIPGL-----KKMDKATVLADAIKYVKEL 219
                     999***********************.....9****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.538170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15174233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15175242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-10175224No hitNo description
SMARTSM003534.7E-12176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEEINNTPMN TSETNKWLSD LEIDEYNLFP EESNLNFLDA DEDEFVSHDI ASVFEEQTKQ  60
QCLTSECTST TLSNSFTDET CFESFDFDFD FERQTKQLKT IDNDNNIIDT FSTKVSSSSS  120
NSSFQSQILC FDPSINTQQN EVVSVSQPQL GTKGSSKNQN LESQNKRSRA NSHDHIMAER  180
LRREKLSVSF IALGALIPGL KKMDKATVLA DAIKYVKELK ERLEVLEEQR NKRKADSVEK  240
QTKADLCSDD EYSSSDESIE GAAESQFQVD AKVSGKEILI RIHCKKQKGL LVKIISEIQR  300
FQLFVVKNSL LPFGESILDI TVIAQMGEGY NLTTKELVKN LREAALKFMS LS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573661.10.0transcription factor NAI1-like
TrEMBLA0A1S3EFC30.0A0A1S3EFC3_CICAR; transcription factor NAI1-like
STRINGXP_004509037.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-35bHLH family protein