PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573296.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 523aa    MW: 57087.5 Da    PI: 9.1276
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-13153213155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g   k  + ++lg ++ +++Aa+a++ a++k++g
  XP_012573296.1 153 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsrKGrQGIYLGGYDKEDKAARAYDLAALKYWG 213
                     57*******************6666644785338**********99*************98 PP

2AP247.25.5e-15256307155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_012573296.1 256 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 307
                     57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-16153223IPR016177DNA-binding domain
CDDcd000181.43E-20153223No hitNo description
PfamPF008471.4E-10153213IPR001471AP2/ERF domain
PROSITE profilePS5103217.965154221IPR001471AP2/ERF domain
SMARTSM003806.0E-26154227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-14154223IPR001471AP2/ERF domain
PRINTSPR003672.2E-6155166IPR001471AP2/ERF domain
CDDcd000182.32E-25256317No hitNo description
PfamPF008476.8E-10256307IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18256317IPR016177DNA-binding domain
SMARTSM003801.5E-33257321IPR001471AP2/ERF domain
PROSITE profilePS5103219.045257315IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18257316IPR001471AP2/ERF domain
PRINTSPR003672.2E-6297317IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDSSSSSPPN TLAFSLSNHF PIPSPSHSHL SLFHSFTTYP PSTPSLTLTG SNTVEPSPEA  60
KATNGGTTNL SIFTGEHKFE DFLGSSVATT RSTASTCAPT QLPQFSSDSD LYDSELKKTI  120
AACFPRGFTT EPNSVPQKPS PKKTVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG  180
QSRKGRQGIY LGGYDKEDKA ARAYDLAALK YWGPTTTTNF PTSNYEKELE EMKNMTRQEF  240
VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI  300
AAIKFRGLNA VTNFDMSRYD VKSIANTSLP IGGLSNKNKN PTDSVSESKC HQEASKSDER  360
NPSSSTTTTT FTLSQQPSST STTLNFALPI KQDPSSDYWS ILGFHNNNHS VVVPSANNHN  420
TPFNMDFSVA PSNTNNAMFF SGSTNFVQQQ NGNGSGSSGG SSSSSSSTSS IPFATPIFSL  480
NSNNTSYENG SNYGNWIGVG PSLHTFQTHA KPSLFQTPIF GME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573296.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-151AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1LVQ80.0I1LVQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G00950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-136AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Asamizu E, et al.
    Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones.
    DNA Res., 1998. 5(6): p. 379-91
    [PMID:10048488]
  2. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]