PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571529.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 367aa    MW: 41782.5 Da    PI: 4.5677
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.4e-35481392102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ed+++++++sws   nsfvv+d ++f++++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  XP_012571529.1  48 FLTKTFDVVEDPSTDSIVSWSIARNSFVVWDLHKFSTNILPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLAGQRNLLKT 133
                     9********************888*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_012571529.1 134 IKRRRN 139
                     ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576122No hitNo description
SuperFamilySSF467851.03E-3144137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5844137IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3644137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3048137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-184871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-188698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MKGITVKEEE TLTYTNVGST SCSSSSSSSS TLIPKPMEGL HDVGPPPFLT KTFDVVEDPS  60
TDSIVSWSIA RNSFVVWDLH KFSTNILPRY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLAGQRNL LKTIKRRRNV TQSHVMQQET GGGACVELGE YGLEGEIERL RRDRTLLMAE  180
IMKLRQQQHN SRDQLSDMET RLLNTEKKHQ QMMNFLARAL SNQSFIQQLA NNKELKGVET  240
KRKRRLTASS SLENLHNDSV VDYCSQEQQE GLTTIESEIE NLLTAYDNES SSEIKEYPTL  300
SSVANASDDT VWEDLLNQEL VAGNPDDEVV IGDLSQINVP LEDLEEKKDD DWTVDLQNLV  360
DQMDFQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-254613727129Heat shock factor protein 1
5d5v_B4e-254613727129Heat shock factor protein 1
5d5v_D4e-254613727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136LKTIKRR
2168173RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571529.10.0heat shock factor protein HSF30
RefseqXP_012571530.10.0heat shock factor protein HSF30
RefseqXP_027190779.10.0heat shock factor protein HSF30
SwissprotP411521e-114HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1S3E8310.0A0A1S3E831_CICAR; heat shock factor protein HSF30
STRINGXP_004501463.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-98heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]