PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570046.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 339aa    MW: 38099.8 Da    PI: 7.3579
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008154176123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_012570046.1 154 YECKTCNRTFPSFQALGGHRASH 176
                     99**********99999998887 PP

2zf-C2H2130.0003227249123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_012570046.1 227 HECSICGSEFTSGQALGGHMRRH 249
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-13153178IPR007087Zinc finger, C2H2
SuperFamilySSF576679.37E-9153176No hitNo description
SMARTSM003550.052154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637154181IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SuperFamilySSF576679.37E-9222249No hitNo description
PfamPF139128.1E-12226251IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743227249IPR007087Zinc finger, C2H2
SMARTSM003550.019227249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
METPPEQQQQ QQQQVSLGSK EHTNIIKGKR TKRVRPQSPI PFSITANSST AEGDGEREDF  60
YNGDDVVNNN NNNNNTSPTT SYVTGLIQES SMIDEEHDMA NCLILLAQGQ SRELSSPKNT  120
TTEEDGGMNY TKYSSRKFME AASLDSGRAG YYVYECKTCN RTFPSFQALG GHRASHKKPK  180
ALPIAQDRKQ PFFDDEEFQF KTNNNHKSIS LQFNKGNVNN NNKSKVHECS ICGSEFTSGQ  240
ALGGHMRRHR APVGTSSANT TLSLTPMSLV HEDHARKRRN VLSLDLDLNL PAPEDDQRES  300
KFAFGNKQQQ QQQQHQQQQQ QQQQQSLVFS APALVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570046.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105241e-51AP010524.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT34P16, TM1824, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570046.10.0zinc finger protein ZAT5
TrEMBLA0A1S3E4S60.0A0A1S3E4S6_CICAR; zinc finger protein ZAT5
STRINGXP_007144239.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-78C2H2 family protein