PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569984.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 357aa    MW: 39315.1 Da    PI: 7.0354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10206250554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + v+Y+k L
  XP_012569984.1 206 HSIAERLRRERIAERMKALQELVPSiN------KTDKAAMLDEIVDYVKFL 250
                     99***********************77......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.19E-11199255No hitNo description
SuperFamilySSF474596.54E-16199260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.729201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15203261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8206250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-12207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGNCSSEGL GDDFFEQILA VPESGYGRNN NNSSNRGIVV DDHVLQLGST TNLRSGGMQL  60
PLGLNLEQSH HGFLRHQDTT RFVENVVDVE GNITNNNNHH RHLRLHDINT TSNSSPSSTL  120
HLDRDSMHMR GLFSTFGQLH TPTHAQPVRP MLPSPPPQPQ LHLHHQQHQQ QFQSQAPNPT  180
SVAAMPQPPG IRPRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPS INKTDKAAML  240
DEIVDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADVPVSAV EGEDVEGGAN QQAWTKWSND  300
GTEQQVAKLM EEDVGAAMQL LQSKALCIMP ISLASAIFRM PQSDSSTIIK PESNNHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569985.10.0transcription factor UNE12-like isoform X1
SwissprotO227681e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S3E2K90.0A0A1S3E2K9_CICAR; transcription factor UNE12-like isoform X1
STRINGXP_004496017.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]