PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569792.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 356aa    MW: 41598.2 Da    PI: 5.8614
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.6e-34421332102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d ++++++sws+ g+sfvv+d+++f++ +Lp+yFkh+nf+SF+RQLn+YgF+k+++++         weF+++ F kg+++ll++
  XP_012569792.1  42 FLTKTFDVVDDTTTNHIVSWSRGGTSFVVSDPHNFSNLLLPRYFKHNNFSSFIRQLNTYGFRKIDSDR---------WEFANEGFLKGQRHLLKN 127
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+rkk+
  XP_012569792.1 128 IRRKKT 133
                     ****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5738131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3338131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3042131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNYVYSVKEE YVEPLPLRNE YLPTIPPPLP MEELHEIGPP PFLTKTFDVV DDTTTNHIVS  60
WSRGGTSFVV SDPHNFSNLL LPRYFKHNNF SSFIRQLNTY GFRKIDSDRW EFANEGFLKG  120
QRHLLKNIRR KKTPSHTTSS QQGKSHSVEV SSFELDVEIN RLKKQKQVLM MELVSLRQQQ  180
YNTTLYLLEM EQKLRGIETK QKQMMSFLAR AMKNPAFIHQ LLQQKEKKKE LEETMAKKRR  240
LGIGQSSSEG EERRSSVVKV EPLELSDYEF GVSEMEMLAM EIQVFGRGEM DKEEIPETLE  300
SQESRDRVLD DEGFWEELMF SVKFEGIFGL PTAEDKNDSS EPLNQEFRIN SFHSVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-244013318122Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569792.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_012569793.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_012569794.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-101HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A072VKS21e-167A0A072VKS2_MEDTR; Heat shock transcription factor A3
STRINGGLYMA19G34210.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-86heat shock transcription factor A6B