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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HSF | ||||||||
Protein Properties | Length: 356aa MW: 41598.2 Da PI: 5.8614 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.4 | 5.6e-34 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d ++++++sws+ g+sfvv+d+++f++ +Lp+yFkh+nf+SF+RQLn+YgF+k+++++ weF+++ F kg+++ll++ XP_012569792.1 42 FLTKTFDVVDDTTTNHIVSWSRGGTSFVVSDPHNFSNLLLPRYFKHNNFSSFIRQLNTYGFRKIDSDR---------WEFANEGFLKGQRHLLKN 127 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+rkk+ XP_012569792.1 128 IRRKKT 133 ****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.3E-37 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-57 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.58E-33 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-30 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MNYVYSVKEE YVEPLPLRNE YLPTIPPPLP MEELHEIGPP PFLTKTFDVV DDTTTNHIVS 60 WSRGGTSFVV SDPHNFSNLL LPRYFKHNNF SSFIRQLNTY GFRKIDSDRW EFANEGFLKG 120 QRHLLKNIRR KKTPSHTTSS QQGKSHSVEV SSFELDVEIN RLKKQKQVLM MELVSLRQQQ 180 YNTTLYLLEM EQKLRGIETK QKQMMSFLAR AMKNPAFIHQ LLQQKEKKKE LEETMAKKRR 240 LGIGQSSSEG EERRSSVVKV EPLELSDYEF GVSEMEMLAM EIQVFGRGEM DKEEIPETLE 300 SQESRDRVLD DEGFWEELMF SVKFEGIFGL PTAEDKNDSS EPLNQEFRIN SFHSVH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-24 | 40 | 133 | 18 | 122 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012569792.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Refseq | XP_012569793.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Refseq | XP_012569794.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-101 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A072VKS2 | 1e-167 | A0A072VKS2_MEDTR; Heat shock transcription factor A3 | ||||
STRING | GLYMA19G34210.1 | 1e-144 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-86 | heat shock transcription factor A6B |