PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569361.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 100aa    MW: 11467.6 Da    PI: 5.7722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.6e-181260253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                    +y+G+r+++ +g+++AeIrdp+      r++lg+f+tae+A +a++aa+  +
  XP_012569361.1 12 HYRGIRRRP-WGKFAAEIRDPTRK--GSRIWLGTFDTAEKAGRAYDAAAFHF 60
                    7********.**********8542..4*********************9866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-121258IPR001471AP2/ERF domain
SMARTSM003801.8E-241275IPR001471AP2/ERF domain
CDDcd000184.76E-221261No hitNo description
PROSITE profilePS5103221.0871272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-271264IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-191264IPR016177DNA-binding domain
PRINTSPR003674.5E-111324IPR001471AP2/ERF domain
PRINTSPR003674.5E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MEGERKNNVE VHYRGIRRRP WGKFAAEIRD PTRKGSRIWL GTFDTAEKAG RAYDAAAFHF  60
RDDNDDTFDD LACLDNKFLE ELLQVQDEAA GSSRSTNSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211261554ATERF1
3gcc_A1e-211261554ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569361.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027188078.17e-54ethylene-responsive transcription factor ERF098-like
SwissprotQ9FKG11e-23EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLA0A3Q7XML92e-52A0A3Q7XML9_CICAR; ethylene-responsive transcription factor ERF098-like
STRINGXP_004493870.11e-55(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.16e-26ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]