PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568795.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 461aa    MW: 51229.8 Da    PI: 7.6569
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.61.3e-35752082115
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                    +s s+s+c++ 
  XP_012568795.1  75 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDSISELPSLnintfpqtptherqnnnnnlNSLSKSACSST 169
                     689*************************************************************8887776666555544444433333444333 PP

             TCP  77 sssssasnsssgkaaksaakskksqksaasalnlakesr 115
                     s+ s++s+  ++k ++s+  ++++q+++++  +++++++
  XP_012568795.1 170 SETSKGSERAKEKDNESSFAQQQQQQQHHHDVSVNHNHH 208
                     333333322222222222233333333333344444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-3776201IPR005333Transcription factor, TCP
PROSITE profilePS5136931.15177135IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEDEIEAQAC KFPRLGNGSS NNKNIGKYPL DDEEQELIIR RKNVREIGRI DDVNVNTRNH  60
FQNHSSRIVR VSKASGGKDR HSKVMTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA  120
VEWLINAASD SISELPSLNI NTFPQTPTHE RQNNNNNLNS LSKSACSSTS ETSKGSERAK  180
EKDNESSFAQ QQQQQQHHHD VSVNHNHHIS QTASFTELLT GGIGSSNVRI PTTTSPNGSV  240
HDSQINNHGD EFNKTRHHQQ WSSTVTPIMD YFNSGLMVSN SRTHHHNQSS TSSSSSSGCF  300
QLGQQHSLPV SPFSNSGENN SDIQMQQHFP FMSEHLMQQQ AVVTSSSSSH QASGNNDHHY  360
NLNFAISSSG LVGYNRGTLQ SNSQSLLHQL QRFSPMDGSS TTSSSNNLPF FMGATVTPAV  420
PSTMDNNHQH LPFSPVFDAR LQLCYTDGSR HSDQKGKCNK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2382136155Putative transcription factor PCF6
5zkt_B4e-2382136155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486003.10.0transcription factor TCP2
RefseqXP_004486006.10.0transcription factor TCP2
RefseqXP_004486007.10.0transcription factor TCP2
RefseqXP_004486008.10.0transcription factor TCP2
RefseqXP_012568798.10.0transcription factor TCP2
RefseqXP_012568800.10.0transcription factor TCP2
RefseqXP_027186410.10.0transcription factor TCP2
RefseqXP_027186411.10.0transcription factor TCP2
RefseqXP_027186413.10.0transcription factor TCP2
RefseqXP_027186414.10.0transcription factor TCP2
RefseqXP_027186416.10.0transcription factor TCP2
RefseqXP_027186427.10.0transcription factor TCP2
TrEMBLA0A1S2XA170.0A0A1S2XA17_CICAR; transcription factor TCP2
STRINGXP_004485999.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-42TCP family protein