PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568597.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 303aa    MW: 34840.7 Da    PI: 7.3539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000516587123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C+k+Fs+   L  H r H
  XP_012568597.1 65 HKCEFCDKTFSSGKALGGHKRFH 87
                    79**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-56389No hitNo description
PROSITE profilePS5015710.0556587IPR007087Zinc finger, C2H2
PfamPF139129.1E-86588IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDCNDQKNKF NNNLLQYTRK NSMKAIEKKK SLASTCHDSS KVYVEPKGHD DEGSPSEKPT  60
SSILHKCEFC DKTFSSGKAL GGHKRFHLQA LKKEKEDDNF PSKKALYGHM RSHPNREWRG  120
IHPNKDNYNI DYYDDHDQYI LSQPKEFGID DESNSWPPKS FKTDKRGRKD IRCKEVVNAC  180
HILMYMSRDT RLHSNLNENL DDEAKDEKVL PSTSGLIGDN IGEINNSNSK RMKLLVKFKN  240
PCSTSKDNIL MEKDCYQHGS YDGEEKKSNM PHEQIRESSQ SISKNIIGFD LNDAPNNVDD  300
ETN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568597.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618052.14e-80zinc finger protein AZF1
TrEMBLG7K0M69e-79G7K0M6_MEDTR; C2H2 and C2HC zinc finger protein
STRINGAET010112e-79(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-11C2H2 family protein