PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568527.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 326aa    MW: 35983.1 Da    PI: 5.0812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.1e-10247289855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  XP_012568527.1 247 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 289
                     569*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-12237297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-13238297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-11241293No hitNo description
SMARTSM003531.0E-11245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-7249289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALANKNILH ASSLSTKFQT FIFDEETNTM EINSLMSHGV NDYQKSMVED EDGSQSTNGL  60
SNDSASASAT THSPTLCGSS TKGYVYNNTS YQLDEEESLI NFKGNEYYSN LVMQGSESLL  120
SFQQSWMVSN DNNLQEWNHV SPKSTTNLCM VEGLSNLETS SGCYGSIFKE KQSGESSCGW  180
LYSEPNVPCD DHSLINESAT HESISVFKKR SSMGENMQPA NAKKPCTIAS KTEKHKSNPS  240
KDPQSVAAKN RRERISERLK ILQELVPNGS KVDLVTMLEK AISYVKFLQL QVKVLAADEL  300
WPIQCGKAPD IGQVKQAIDA ILSSQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311231e-107KT031123.1 Glycine max clone HN_CCL_81 bHLH transcription factor (Glyma14g07590.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568527.10.0transcription factor bHLH83
TrEMBLA0A1S3DYF60.0A0A1S3DYF6_CICAR; transcription factor bHLH83
STRINGXP_004490858.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-55RHD SIX-LIKE 1