PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567364.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HB-other
Protein Properties Length: 178aa    MW: 19887.2 Da    PI: 8.2577
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.58.2e-072233354
                    HHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox 33 LAkklgLterqVkvWFqNrRak 54
                    LAk++gL+ +qV++WF N R +
  XP_012567364.1  2 LAKQTGLSRNQVSNWFINARVR 23
                    9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.139127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-13131IPR009057Homeodomain-like
PfamPF059204.9E-9123IPR008422Homeobox KN domain
SuperFamilySSF466895.13E-9134IPR009057Homeodomain-like
CDDcd000864.71E-7228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLAKQTGLSR NQVSNWFINA RVRLWKPMVE EIHMLESQQT QKEPQRDENP STSTDKFQLR  60
SNNNIAENPC NSTDKFHNVA YKRTRNELSN MSVLNQQVGS NGVSMGSNVA TSNNGVSLTL  120
GLHQNHGIGL SEPFNMSVAQ CFGLALQPDS YVMSTFQSQN RQFGRDLIGG QILHDFVG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515686.11e-131BEL1-like homeodomain protein 9 isoform X1
RefseqXP_012567363.11e-131BEL1-like homeodomain protein 9 isoform X1
RefseqXP_012567364.11e-131BEL1-like homeodomain protein 9 isoform X2
RefseqXP_027186728.11e-131BEL1-like homeodomain protein 9 isoform X1
RefseqXP_027186729.11e-131BEL1-like homeodomain protein 9 isoform X1
SwissprotQ9LZM84e-33BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1S3DVW31e-129A0A1S3DVW3_CICAR; BEL1-like homeodomain protein 9 isoform X1
TrEMBLA0A1S3DW101e-129A0A1S3DW10_CICAR; BEL1-like homeodomain protein 9 isoform X2
STRINGXP_004515686.11e-130(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-35TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]