PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516674.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 263aa    MW: 29278.7 Da    PI: 8.4075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.7e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+
  XP_004516674.1   4 SCNGCRVLRKGCSEDCIIRPCLewikcPQSQANATVFLAKFYGRAGLINLINSGPQNLRPAIFRSLLYEACGRIANPIYGSVGFLWSGSWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     +++ +l +e
  XP_004516674.1  99 AVDSVLKGE 107
                     *99887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.6E-921262IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8513109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-254101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCI IRPCLEWIKC PQSQANATVF LAKFYGRAGL INLINSGPQN  60
LRPAIFRSLL YEACGRIANP IYGSVGFLWS GSWQLCQAAV DSVLKGEPIK PITSEAAANE  120
RAPPLMAYDI RHVAKDDNLK ETQQAKTRSR FKRTMKPKAS KKTGSGLVEE KNESESLLSY  180
HCKDNESGVS VETSILFHNE PESKPKMSDR ADENVTDEVG LELRLGIEPV SREEHVVPIK  240
KRKIELKDWG VSCKVELGLE LVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1477411e-66AC147741.12 Medicago truncatula clone mth2-17b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516674.10.0LOB domain-containing protein 41-like isoform X1
SwissprotQ9M8862e-93LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S2Z7Z20.0A0A1S2Z7Z2_CICAR; LOB domain-containing protein 41-like isoform X1
STRINGXP_004516674.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-96LOB domain-containing protein 41