PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 392aa    MW: 44017.7 Da    PI: 8.661
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.63.4e-2854143366
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................s 66 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ +                           
  XP_004516160.1  54 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLqfpqgfsqfhhpqtllpfhesitsasH 143
                     78*************************************************************555555544444444433333332220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.8E-2755196IPR005333Transcription factor, TCP
PROSITE profilePS5136928.06255113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MASSREGYEA KQEGGENSNN NSIEKISKAA STSRQWSSTG LRNPRIVRVS RTFGGKDRHS  60
KVCTIRGLRD RRIRLSVPTA IQLYDLQDKL GLGQPSKVID WLLEATKFDI DKLPPLQFPQ  120
GFSQFHHPQT LLPFHESITS ASHELSLGPL YDPSSSFVGI QNLMARSKFW EMDSRVNNKG  180
KEVEREYFVE KGKWIKTNEE ENHEASYNNF QQTSTQKLFP METHSTLPSF LNNNAMSYNN  240
YHLEPSNLSL SQFGGSHGLF QSQQVDPNQS SGNGLQFPFS FPLQQSTSQL LFGPSSSSTS  300
PSSSSLLSNP FMTTTNSVEN DPRVQQFNHF QFINSSSSSS QAMTHPLLPS FHSFNSPAVR  360
PFPMPFSSKL LDLDNNHNGN QHDNKGCRGD RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1860114155Putative transcription factor PCF6
5zkt_B2e-1860114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027186853.10.0transcription factor TCP17-like
TrEMBLA0A3Q7XK240.0A0A3Q7XK24_CICAR; transcription factor TCP17-like
STRINGXP_004516160.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-53TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5