PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515927.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 295aa    MW: 32903.5 Da    PI: 8.2346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016113135123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_004515927.1 113 YECKTCNRCFPSFQALGGHRASH 135
                     99**********99999998887 PP

2zf-C2H213.70.00019194216123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_004515927.1 194 HECSICGSEFSSGQALGGHMRRH 216
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.7E-7112135No hitNo description
PROSITE profilePS5015710.159113140IPR007087Zinc finger, C2H2
SMARTSM003550.14113135IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-11113137IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576673.7E-7189216No hitNo description
PfamPF139126.8E-12193218IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764194216IPR007087Zinc finger, C2H2
SMARTSM003550.02194216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQVLEELMMV SKDHTQQIIK GKRTKRQRLP SPLRLTMSSS SYNEGTSYKS YNNNNYDNNS  60
TRDVDLATIG SSGQSEEEKE EEDMANCLIL LAQGGHHHNV SNNHNSNNSS YLYECKTCNR  120
CFPSFQALGG HRASHSKPNK VNCNNIIEQK QVITTSFVDD HKYDPTMNTI LSLQAFSTSP  180
ITTTTTTPKK SKVHECSICG SEFSSGQALG GHMRRHRALV NTSTTTTTTT TTSMSLSIGS  240
PKSHHEAKKP RNVLKLDLNL PAPEVDHQRD QSTFSFQPRE NVIAFSNSSL VDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515927.10.0zinc finger protein ZAT5
TrEMBLA0A1S2Z6H50.0A0A1S2Z6H5_CICAR; zinc finger protein ZAT5
STRINGXP_004515927.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.18e-43C2H2 family protein