PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513356.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 428aa    MW: 48550.4 Da    PI: 9.5566
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP148.44.9e-461282862136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...... 73 
                     ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aik+lt++                 s++s+s+c      
  XP_004513356.1 128 PPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSkqknnnedgddddedakSFTSSSDCevvsdi 222
                     78**************************************************************9999999999998888877777888777665 PP

             TCP  74 eaesssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                     +++ss+ ++++++ g+ +k+++ k+ + ++s+    n++kesr+karararert++k +++n++
  XP_004513356.1 223 KQHSSNLKQNQDGDGDFSKEKKlKRAQIKESSCIRANKMKESREKARARARERTSNKISNNNNT 286
                     6666666666666667777777577777777777889999*******************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-43130281IPR005333Transcription factor, TCP
PROSITE profilePS5136935.805130188IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607262279IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MFPFNSNPYP SFVPNSSASS SSLFSFPFLN PENASSSNNS NNNTLFLDPF SIPYIPTHHH  60
HHPHHHNITN IQETLTNLAE NNNNSNNNSN SNNNNNNNNI AIPMAKQDPS TIGGGSHYGI  120
SCFLAKKPPK KDRHSKIYTS QGLRDRRVRL SIEIARKFFD LQDMLGFDKA SNTLDWLFTK  180
SKKAIKDLTK SKQKNNNEDG DDDDEDAKSF TSSSDCEVVS DIKQHSSNLK QNQDGDGDFS  240
KEKKLKRAQI KESSCIRANK MKESREKARA RARERTSNKI SNNNNTLKIH QLELKKKYPT  300
TNENFQAFHQ SRSSLQDHQL VSSSETPRDD FNVIEESIVI KRKLKPSLMV SHHHHHQHQN  360
HVIPKEATNF NNSEYHSYPN SSPNWDASNN SASSSNRSTF CAIASMNLST GLQIFGKSWE  420
ECTNPRLH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513356.10.0transcription factor DICHOTOMA-like
TrEMBLA0A1S2Z1L00.0A0A1S2Z1L0_CICAR; transcription factor DICHOTOMA-like
STRINGXP_004513356.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-27TCP family protein