PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512974.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 332aa    MW: 37541.6 Da    PI: 4.7741
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34131042102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d+++++li+w   +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++
  XP_004512974.1  13 FVMKTYQMVNDQTTDNLIKWGPANNSFIVLDPLDFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKN 98 
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i rkk+
  XP_004512974.1  99 IARKKH 104
                     ***985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-529102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-3610102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGGMEQNNVI APFVMKTYQM VNDQTTDNLI KWGPANNSFI VLDPLDFSHS LLPVFFKHNN  60
FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQKHLLKNIA RKKHVGGKIN NSNYNYFNDV  120
KFEDLDEDEA MVTEIAKLKE EQKTLEEELQ RMNNRLETTE KRPQQMMAFL CNVVEDPQIL  180
SRILVEREKE KVIDKKKPRL ILPETAAMTA ATTSTSSSSS GMAVVNSVKT EFEEDEVTVA  240
YNMMSLSPET GFEIDYFRRE PPPAVAPVVG WWGQTQIGQM GYGCDSTVAP TPLTVVSPAA  300
APELGRVGIF SEMAAENNSL PPYPFSLLEG GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-24210219129Heat shock factor protein 1
5d5v_B9e-24210219129Heat shock factor protein 1
5d5v_D9e-24210219129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512974.10.0heat stress transcription factor C-1
SwissprotQ9LV528e-83HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S2Z0S80.0A0A1S2Z0S8_CICAR; heat stress transcription factor C-1
STRINGXP_004512974.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-75heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]