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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 380aa MW: 42035.3 Da PI: 7.0153 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.7 | 1.6e-18 | 296 | 330 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l XP_004512096.1 296 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 330 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.0E-16 | 290 | 344 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.569 | 290 | 326 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-13 | 293 | 353 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 294 | 328 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.24E-13 | 295 | 343 | No hit | No description |
Pfam | PF00320 | 2.3E-16 | 296 | 330 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 296 | 321 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MLYQTPYPLL FQFHPLPSSS TIQQVPLPQA EKTEMECVET ALKTSLRKDM TVKLNPQTFV 60 DELSCLNAQN GTSCDDFFVD DLLDFSHVIE EQQQQEEEKD SSICVSLKQH NQNHEISNLN 120 STSFSLKDDF CSLPTTDLNV PSDDVADLEW LSHFVEDSDS FSEFSAALPV VTLTEKNPKS 180 VVVVNESEPK PENKPKSPVF SQPCFKTPVQ TKARSKRTRT SVRVWPFGSN SLTESSSSST 240 TTSSSTSSSP TSTLLIYTNL AQNLEKVYSV PEKKPKKIAS FNGSGHGTVA LAPRRCSHCG 300 VQKTPQWRTG PLGAKTLCNA CGVRFKSGRL LPEYRPACSP TFSSELHSNH HRKVLEMRRK 360 KEVVGGVETG LSPSPVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512096.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 2e-80 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | G7KGC3 | 1e-149 | G7KGC3_MEDTR; GATA type zinc finger transcription factor family protein | ||||
STRING | GLYMA01G37450.1 | 1e-136 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-69 | GATA transcription factor 5 |