PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511801.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28943.5 Da    PI: 8.0665
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-18110164256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_004511801.1 110 RKKLRLTKQQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 164
                     788899***********************************************98 PP

2HD-ZIP_I/II1216.2e-39110199191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q+ lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_004511801.1 110 RKKLRLTKQQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLNKELQELK-AL 199
                     69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-18103167IPR009057Homeodomain-like
PROSITE profilePS5007117.2106166IPR001356Homeobox domain
SMARTSM003891.9E-14108170IPR001356Homeobox domain
PfamPF000461.9E-15110164IPR001356Homeobox domain
CDDcd000861.01E-14110167No hitNo description
Gene3DG3DSA:1.10.10.601.1E-16110164IPR009057Homeodomain-like
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
SMARTSM003402.8E-22166209IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9166200IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGVQQDSNNS GLHLVLGLSL NPNETTINHH SISMKNYSSN EPSLTLGLSS ESTYCTNNQA  60
HSNSVVSSFS SGRVLQQVKR ERDFSYEEVE EERVNSSRVS DEDEDATNAR KKLRLTKQQS  120
LLLEESFKLH STLNPKQKQA LARQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE  180
TLTDENRRLN KELQELKALK LTTQSLYMPM SAATLSMCPS CERLGEEGGP NKITAFTMAP  240
NSHFYNHFNN PPAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511801.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-87HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1S2YY600.0A0A1S2YY60_CICAR; homeobox-leucine zipper protein HAT22
STRINGXP_004511801.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]