PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511446.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 318aa    MW: 35379.3 Da    PI: 5.2634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-102382781055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_004511446.1 238 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 278
                     9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.053228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14229294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12233287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.40E-11237282No hitNo description
PfamPF000109.5E-8238278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEPAELISEE WSSLSGLYTA EEADFMNHFL GLANANANAN SSLPQQHLYQ NSNESTILSV  60
TKNNSNFAAQ VPNSSNIFFP TTTDPVNNFG YISMGISIGD DCKFSPYITQ GNESKHTNDN  120
TDENIIADKD LQVPKECEIR RAGKRSRSSN EVPKNKRNVK SRKNIRCASL CSEENTSPVS  180
QDQTLSSCAS EDDMNSSHEL RREASSSLSQ DDSTALKLSG KSISSRGTAT DPQSLYARKR  240
RERINERLRI LQNLVPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDDLW MYAPIAYNGM  300
NIGLELGITP TKDTKDMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150437e-41AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511446.10.0transcription factor bHLH84-like
TrEMBLA0A1S2YXC70.0A0A1S2YXC7_CICAR; transcription factor bHLH84-like
STRINGXP_004511446.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-50bHLH family protein