PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HB-other
Protein Properties Length: 377aa    MW: 42018.4 Da    PI: 7.8871
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.82.8e-061474755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    ft+ +++e+e   ++  n  p +e  + LA+k            ++ +qV +WFqN+R+  
  XP_004511250.1 14 FTQPEVTEMEVILNEhnNAMPAREVLAALADKFsesperkgkiTVQMKQVWNWFQNKRYAI 74
                    7788888888887754588999999999999999999999999999************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-9476IPR009057Homeodomain-like
SMARTSM003890.0077781IPR001356Homeobox domain
PROSITE profilePS500719.1511377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-71381IPR009057Homeodomain-like
PfamPF167191.2E-40129255IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQPEVT EMEVILNEHN NAMPAREVLA ALADKFSESP ERKGKITVQM  60
KQVWNWFQNK RYAIRAKSSK TPGKLNITPM PRDNMAPARN MPQLTASPIX APSVSVQTTA  120
KGTPENSVME FEAKSGRDGA WYDVANFLSY RHLESSDPEV LVRFAGFGSE EDEWINVRKN  180
VRPRSLPCES SECVAVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDVR GCRCRFLVRY  240
DHDQSEEIVP LRKVCRRPET DYRLHQLHAV HDSAAPADQK SGMDPANIHG IKVTNSSETV  300
QKQQQIANIH IVTPVLQTNV SIPPLPPPPP PQSMNVDPKK VETKLDVQAG NSVTPVSVPF  360
TTSNVPEVST QNLAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-461292594134SHH1 SAWADEE
4iur_B3e-461292594134SHH1 SAWADEE
4iut_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511250.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-142SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S2YWW80.0A0A1S2YWW8_CICAR; protein SAWADEE HOMEODOMAIN HOMOLOG 2
STRINGXP_004511250.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-132sequence-specific DNA binding transcription factors;sequence-specific DNA binding