PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 282aa    MW: 32188.8 Da    PI: 6.1786
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1876129356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  XP_004511225.1  76 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 129
                     456899***********************************************9 PP

2HD-ZIP_I/II133.66.9e-4375165191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+yd++k++n++L++++++L++e+
  XP_004511225.1  75 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDSIKADNDALQAQNQKLQTEI 165
                     69**************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1970133IPR009057Homeodomain-like
PROSITE profilePS5007117.21671131IPR001356Homeobox domain
SMARTSM003891.2E-1874135IPR001356Homeobox domain
PfamPF000466.2E-1676129IPR001356Homeobox domain
CDDcd000861.13E-1576132No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1978138IPR009057Homeodomain-like
PRINTSPR000318.7E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000318.7E-6111127IPR000047Helix-turn-helix motif
PfamPF021836.0E-17131171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAFFPTNFML QTSHQDDHQT PPSLNSIITS CAPQEYHGGG VSFLGKRSMS FSGIELGEEA  60
NVEEELSDDG SQLGEKKRRL NMEQVKTLEK SFELGNKLEP ERKMQLARAL GLQPRQVAIW  120
FQNRRARWKT KQLEKDYDVL KRQYDSIKAD NDALQAQNQK LQTEILALKS REPTESINLN  180
KETEGSSSNR SENSSEIKLD ISTRTQAIDS PLSTQQTSRN LFPSSSRPTG VAQLFQTNSR  240
QDHIQCQKIN DHMVKEESLS NMFCGIDDQS GLWPWLEHQH FN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0519610.0BT051961.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-H-4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511225.10.0homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-115ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1S2YWW90.0A0A1S2YWW9_CICAR; homeobox-leucine zipper protein ATHB-13-like
STRINGXP_004511225.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-105HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]