PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510891.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 338aa    MW: 36517.4 Da    PI: 9.8434
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.35.7e-3870174396
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaessss 80 
                      k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt                 ++s+++++++e++++
  XP_004510891.1  70 QKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTgtvpaiamsvngtlkipTTSPNKSSDPEQNQQ 164
                     5899***********************************************************55555544444444443222222222222222 PP

             TCP  81 sasnsssgkaaksaak 96 
                     + +       +++++k
  XP_004510891.1 165 QLE------DSPDKKK 174
                     222......1111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-3274176IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14175129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSQEGSRNID LTLGEPKEEP ETEDGSAINV MPMAMHVPTG ISMSMQVNKA LIQAQAQAQT  60
QVIQHQQPLQ KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE  120
HAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TSPNKSSDPE QNQQQLEDSP DKKKRKRPVN  180
SAYVDINDST VSVSAGLITT SISNANINTN LTTTAIIPQQ TAIPLPQNMV PVWAIPSNAV  240
VPAGSAFFVV PTNQPQFFTL ARPISAFVSS MVTPVQIQQT STSSNTCSIS PPSKSPARAS  300
VMAPTAAATT TTQMLRDFSL EIYDRQELQL LSRSSSKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177DKKKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510891.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510891.10.0transcription factor TCP9
SwissprotO646472e-80TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A1S2YW730.0A0A1S2YW73_CICAR; transcription factor TCP9
STRINGXP_004510891.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-75TCP family protein