PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510665.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 620aa    MW: 69076.5 Da    PI: 6.4649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13462508455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_004510665.1 462 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 508
                     799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5453247IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047458507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17461521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-15461511No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17462521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10462508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-16464513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKIEVGLGVG GLWNEEEKAM VVEVLGVNAL NYLISNSVSN ENLLMAIGSG ENLQNKLSDL  60
VERPNVLNFS WNYAIFWQIS QSKFGDWVLG WGDGCCREPK EQEQEKQEED LRMKGVYVED  120
EKKQRMRKRV LQKLHTTFGG SDEDNYAFGL DRVTDTEMFF LASMYFSFPR GHGGPGKSFA  180
TGKHLWLIDA LKSDYDDDDY CVRSFLAKSA GFKTIVLVPT DLGVVELGSV RNVCESFELL  240
QTVKSVFSSQ SSFPRVKSIS LSMDDEKRDE NAPFSCLAVG ESIKTNVNNV NHNHHLNNHS  300
RVEGVGVPKI FGQELNSATA TPSREKLAVR KMEERPWGGH PNGNGVSFPN GVNGSSWRAS  360
QVVRQHAPVD VFAPRMSPST SNAPEVGNDV RHEFVLNNYQ QQRQAQMQID FSGATSRPSV  420
RSIVGESELS DIDREEKPSP SDERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA  480
LRAVVPNISK MDKASLLGDA IAYINELQAK LVTMESERAQ FGSTSRDGSS SVLQANPRAP  540
DVDIQAAQDG VIVKVSCAID AHPISKLIQT FKDAEISIVE SKLNTASDTV FHTFIIKSQG  600
SEQLTKEKLI AAFSRESNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-32456521267Transcription factor MYC2
5gnj_B7e-32456521267Transcription factor MYC2
5gnj_E7e-32456521267Transcription factor MYC2
5gnj_F7e-32456521267Transcription factor MYC2
5gnj_G7e-32456521267Transcription factor MYC2
5gnj_I7e-32456521267Transcription factor MYC2
5gnj_M7e-32456521267Transcription factor MYC2
5gnj_N7e-32456521267Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443451RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510665.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510665.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1S2YVN50.0A0A1S2YVN5_CICAR; transcription factor bHLH13-like
STRINGXP_004510665.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-171bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]