PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 405aa    MW: 44170.2 Da    PI: 7.0412
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.16.4e-38411802110
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssg. 88 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++       +++++       s  ++++++ + 
  XP_004510040.1  41 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAQLpawnptaTTPPS-------STPQQHHQHTDe 128
                     79**************************************************************666655433333.......333333222222 PP

             TCP  89 .............................kaaksaa.kskksqksaasalnl 110
                                                  ++ +s++ + +++++++++++ +
  XP_004510040.1 129 mfhrqspvhddpvtgstsrraaalerripQQFSSQQlELEDNNNNNNNNSGK 180
                     3333335667777777666666666555422222222333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-3441182IPR005333Transcription factor, TCP
PROSITE profilePS5136933.87743101IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGETTQDNNN TGGAGTATTT SKRIGGGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR  60
VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKASIDE LAQLPAWNPT ATTPPSSTPQ  120
QHHQHTDEMF HRQSPVHDDP VTGSTSRRAA ALERRIPQQF SSQQLELEDN NNNNNNNSGK  180
HKYSNASTSG FLQGSLDTDI ADTIKSFFPV DTATTSFHSY PPPPSDLLSR TPTTQQDLRL  240
SLQSFQDPIM LNHQAQNHHV LFAGASSLGF DGGGWPEQQH HEEHDHGRLH RMMAWNANAV  300
DGGNSGHGGG FVFTAPTPAF GGHAQFFTQR GPLQSSNTPS FRAWIDPSMA TATIADHHNH  360
HYLSPMIHQA SVSGGGFSIP ARIQGEEEHD GVSEKPSSAS SDSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2148101154Putative transcription factor PCF6
5zkt_B7e-2148101154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510040.10.0transcription factor TCP4-like
SwissprotQ9MAH81e-93TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A1S2YUB30.0A0A1S2YUB3_CICAR; transcription factor TCP4-like
STRINGXP_004510040.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-81TCP family protein
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]