PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509986.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 429aa    MW: 47826.7 Da    PI: 6.1886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-063203581154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_004509986.1 320 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 358
                     5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-11319376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.70E-7319362No hitNo description
SMARTSM003530.0049320364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-9323366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAEEQFQGSG NWWETPARNM RFESWQQQQQ QHHDTMSASG SSSVVFHDTL KLQPSDSSNS  60
NNDSNLHMMD LGLSSQTIDW NQASLLGEKS SEGSFRSMLQ ENLNSSNTNF QQENEGVRVG  120
LSHQVNWKQE KLFSTESSNN EFKQVNRGFS LDQTQFSPQY SSEESNMISQ GLSACSSTTF  180
QIDSSTIYGN SSMLQGLLGN ETNQIQQQQA MNFPYSTSYG LTTNELMPSW SKVTHQKQQP  240
QNNQLHFTNN APFWNASEGT IKDAPSSFLP PFATPIFGTP QPKNISEGRD SSSVAKKSGS  300
EPAPKRPKNE TPSPLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKFLHE  360
QVTVLSTPYM KSGAPIQHQQ NSGKSKETEG PKQDLRSRGL CLVPVSSTFP MTHEPTVEYW  420
TPTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509986.10.0transcription factor bHLH123-like isoform X2
SwissprotQ8GXT32e-82BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A1S2YU670.0A0A1S2YU67_CICAR; transcription factor bHLH123-like isoform X2
STRINGXP_004509985.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]