PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509331.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 303aa    MW: 34048.3 Da    PI: 6.9258
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-18221255135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  XP_004509331.1 221 CNHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 255
                     *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.9E-851291IPR016679Transcription factor, GATA, plant
SMARTSM004019.4E-15215269IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767215251IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14216277No hitNo description
Gene3DG3DSA:3.30.50.104.6E-14219253IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.23E-13220268No hitNo description
PfamPF003203.6E-16221255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MECVEAQAAL KSSFIKTTTV KLTPQTLLQE LSTFNVQNVT PVEDFFVDDF LNFSEEEEDE  60
KDENFIDKKQ QPQQQNQNES HQIFHPIIND HFASLPTTEL TVPVEEAADL EWLSYFVEDS  120
FSEFSTTENL QLQFQAKAPE PKPTFSTPCF KTPVPAKARS KRTRTGVRVW PISFVDSSST  180
SSSTTLSSSS THLDECSKPP EKKTKRMASL DGEGRNVSRR CNHCGVQKTP QWRTGPLGPK  240
TLCNACGVRF KSGRLLPEYR PACSPTFSSE LHSNHHRKVL EMRRKKEGVP GSPLPPVAPG  300
FLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509331.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH573e-71GATA5_ARATH; GATA transcription factor 5
TrEMBLG7LD101e-146G7LD10_MEDTR; GATA type zinc finger transcription factor family protein
STRINGGLYMA01G37450.12e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-67GATA transcription factor 5