PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508907.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 308aa    MW: 34673.7 Da    PI: 8.1564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00093202222323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk+F+++  L +H +++
  XP_004508907.1 202 CENCGKTFRSSRALGSHKSVC 222
                     *****************9985 PP

2zf-C2H211.70.00082239261123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+k+F +   L  H r+H
  XP_004508907.1 239 FECPFCSKVFGSGQALGGHKRSH 261
                     89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.3E-4213IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139126.5E-8328IPR007087Zinc finger, C2H2
SMARTSM003550.054426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.106.3E-4194239IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139120.0037200219IPR007087Zinc finger, C2H2
SuperFamilySSF576679.48E-8200261No hitNo description
PROSITE profilePS501578.559200221IPR007087Zinc finger, C2H2
SMARTSM0035575200220IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11239262IPR007087Zinc finger, C2H2
SMARTSM003550.028239261IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097239261IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4240261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MERHKCKLCS RTFGNGRALG GHMKAHLAIA KPKIPLITQS ATSFSSFSSS ESEQEQQQQE  60
EKALVYVLRE NPKMSYKIAD PKFTESLIVV QDRESETESK NPLTRQRSKR NRKNNINNND  120
FQSKKPKMSG FIFSTPTPPF NEQEPVSSVS NTSPEEDVAM CLMMLSRDKW SRERNNINNV  180
FEEQEQEQEE SKVKRVRGKH LCENCGKTFR SSRALGSHKS VCCRNQDQVK NTNNGDKIFE  240
CPFCSKVFGS GQALGGHKRS HLISSSSNSN ANNVNPSVSF KESFIDLNLP APLEVEDDDD  300
DLSVVSDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508907.10.0zinc finger protein ZAT9-like
TrEMBLA0A1S2YRT80.0A0A1S2YRT8_CICAR; zinc finger protein ZAT9-like
STRINGXP_004508907.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-42C2H2-like zinc finger protein