PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508663.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 353aa    MW: 39215.4 Da    PI: 8.3578
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP85.31.5e-2652152366
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ +  i++l+ +                                
  XP_004508663.1  52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATQSDIDKLPPLdipqcftshfhhhqlpppgtsfslggfydqnn 146
                     78*************************************************************66665555555554444444444444444444 PP

             TCP  66 .....s 66 
                           
  XP_004508663.1 147 gmaktR 152
                     333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-2353150IPR005333Transcription factor, TCP
PROSITE profilePS5136928.4853111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMIENSSESY EAKQEGGDGI MKSEKLAGAG STSRQWTSLR NPRIVRVSRS LGGKDRHSKV  60
CTIRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IEATQSDIDK LPPLDIPQCF  120
TSHFHHHQLP PPGTSFSLGG FYDQNNGMAK TRYNNWDIDS SVGRLKGKEA ENVCMDSEKS  180
KLWMKSTNEQ FGSNYFSNSS PSVHGLSSYH NLDPSSTLSL SQFGNSGNNI FPYYHQQVES  240
HHNSGTVMQF SSSSFTNGNS QLLFCPSSVS LFSNNNNSLE TTDNHAARQH LHHQILNSSS  300
SSLSSSSSSS HALMMPLIPT LHLPINSPFR RLPLPFSSKL LDSDHDNNNT RNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1958112155Putative transcription factor PCF6
5zkt_B1e-1958112155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508663.10.0transcription factor TCP17
TrEMBLA0A1S2YR820.0A0A1S2YR82_CICAR; transcription factor TCP17
STRINGXP_004508663.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5