PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508645.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 570aa    MW: 63056.9 Da    PI: 8.6686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.81.7e-17270319255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  XP_004508645.1 270 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 319
                     889*************************9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-24265341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-19266339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.653268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-15270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-15270323No hitNo description
SMARTSM003531.5E-13274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MELSPARPCG AEGAGRKPTH DFLSLYSNST AEQDPRPSAQ ASYLKTHDFL RPLEQFETNS  60
GAKEEATDEI SSVVQKQPTL PAPASVERLL PGGIGTYSIS HVSYANNNNN QRVPKPETSL  120
FTVHQATSTD RNDNNSNCSS HTSSGFTLWE ESEIKKGKIG KENNVGEKPI IGVAESAAKL  180
GHWTSTERTS QSFSNNRHGS FNSRSSSLTT GQKNQSFMEM MKSAKDCAQD EELENEGTFF  240
LKRESSDTQR GDLRVRVDAK STDQKPNTPR SKHSATEQRR RSKINDRFQM LRELIPHSDQ  300
KRDKASFLLE VIEYIHFLQE KVHKYEGSFQ GWNNEPEKLM PWRNNDRPAE KFQPRGANSG  360
SNPSPTLLFA SKVDEKNITI PPTIHGGIHN AESGLSTTTA FKTMDHQSGI LNKAFPIPIT  420
SQPNFFTSTQ TCGSGGVVSQ LRHRLASDAE NTIYQPSVES QAMTSTSEKL KEKELSIEGG  480
AISISSVYSQ GLLDTLTQAL QSSGVDLSQA NISVQIELGK QANIRPTVPM SMRVPKDDED  540
PSKNQRKMRS RVTSSDKSDQ ASKKLKTCRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-31AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508645.10.0transcription factor BIM1
TrEMBLA0A1S2YR680.0A0A1S2YR68_CICAR; transcription factor BIM1
STRINGXP_004508645.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.51e-116bHLH family protein